PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001013.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 681aa    MW: 79432.4 Da    PI: 6.9045
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001013.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.6e-2258149190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 
                              ++Y+++A++ GFsvrk++s+ s + g i+kr+fvC+++g++  +kk++ +++r r++ r+gC+ak+ ++ke     ++w+v ++++
  Itr_sc001013.1_g00002.1  58 EYYRNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPMRKKSAGEHHRDRKSVRCGCDAKMYLSKEVmdgVSQWCVVQFSN 142
                              69********************8888.*******************************************98867789******** PP

                     FAR1  84 eHnHela 90 
                               HnHel 
  Itr_sc001013.1_g00002.1 143 VHNHELL 149
                              *****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2058149IPR004330FAR1 DNA binding domain
PfamPF105514.0E-20281372IPR018289MULE transposase domain
PROSITE profilePS509669.891552587IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-8558587IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-5562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF KSDEDAFEYY  60
RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSAGEHHRD RKSVRCGCDA  120
KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER ILLLSKAGFP  180
IHRIVKVLEL EKEIRGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES DTLDLLEACK  240
SAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS ITYGMLFGVW  300
LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDP GIRDAIQSEL  360
PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYH LESVEDFECH WNEMTSRFGL  420
NSDKHIALLF LFRVCWAFAY TRGCFVAQMN SMSYAKYINA FLKEVFGKHT CLRSFFDQVA  480
ISSNYKTRSH DDWPYMHLRT CSPMEEHAKN VLTDFSFSRL QSELILAMQY TASEMANGSY  540
ILRHFKKDDE RLVIWAPKDE QIHCSCKEFE TSGILCRHAL RVLLMKNYFQ LPEKYFLNRW  600
RQESSLLPCD NIRNGYSSGD WFQEYNALTA TLFSESSITV ERSNYVRQEL TKQLTRLIDE  660
VKSMPPPNGV VMDSSLSPVN I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010646262.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLD7T5G30.0D7T5G3_VITVI; Putative uncharacterized protein
STRINGVIT_00s0194g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10